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Journal Article
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2022
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Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
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Shaffer, J., L.F. Nothias, L.R. Thompson, J.G. Sanders, R. Salido, S. Couvillion, A. Brejnrod, S. Huang, F. Lejzerowicz, N. Haiminen, S. Huang, H. Lutz, Q. Zhu, C. Martino, J. Morton, S. Karthikeyan, M. Nothias-Esposito, K. Duhrkop, S. Bocker, H. Kim, A. Aksenov, W. Bittremieux, J. Minich, C. Marotz, M. Bryant, K. Sanders, T. Schwartz, G. Humphrey, Y. Vazquez-Baeza, A. Tripathi, L. Parida, A.P. Carrieri, K. Beck, P. Das, A. Gonzalez, D. McDonald, S. Karst, M. Albertsen, G. Ackermann, J. DeReus,
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Nature Microbiology
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https://doi.org/10.1038/s41564-022-01266-x
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Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases
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20-NGI3-112
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Journal Article
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2022
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Lake Erie field trials to advance autonomous monitoring of cyanobacterial harmful algal blooms
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Den Uyl, P.A., L.R. Thompson, R.M. Errera, J.M. Birch, C.M. Preston, W. Ussler, C.E. Yancey, S.R. Chaganti, S.A. Ruberg, G.J. Doucette, G.J. Dick, C.A. Scholin & K.D. Goodwin
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Frontiers of Marine Science
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https://doi.org/10.3389/fmars.2022.1021952
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Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases
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20-NGI3-112
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Journal Article
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2022
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Dominance of Sulfurospirillum in metagenomes associated with the methane ice worm (Sirsoe methanicola)
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Lim, S.J., L.R. Thompson, C.M. Young, T. Gaasterland, K.D. Goodwin
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Applied and Environmental Microbiology
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https://doi.org/10.1128/aem.00290-22
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Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases
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20-NGI3-112
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Conference Presentation
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2022
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Machine learning-based taxonomic classification of DNA sequences in marine metagenomes
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Thompson, L.R., S.J. Lim, H. Park, J. Cosme, K. O’Connell, H. Moustahfid, F. Gayanilo, J. Sandeep, C. Nitikitpaiboon, G.R. Cutter, E. Montes, G. Johnson, S. Fisher
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ICES Annual Science Conference
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https://doi.org/10.17895/ices.pub.21558069.v1
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Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases
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20-NGI3-112
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Workshop/Meeting Presentation
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2023
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Behind the Paper from the Knight Lab and EMP Group at UC San Diego
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Thompson, L. R, J. Shaffer
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Metabolomics Association of North America Microbiome Interest Group
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https://www.metabolomicsna.org/interest-groups-mana/#microbiome
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Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases
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20-NGI3-112
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Workshop/Meeting Presentation
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2022
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Environmental DNA for the study of ocean biodiversity from microbes to vertebrates
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Thompson, L. R.
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World Aquatic Veterinary Medical Association
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Applying Omics Technologies to Support Cetacean Conservation in the Gulf of Mexico
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21-NGI3-131
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Journal Article
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2023
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Decoding dissolved information: environmental DNA sequencing at global scale to monitor a changing ocean
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Thompson, L.R., P. Thielen
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Current Opinion in Biotechnology
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https://doi.org/10.1016/j.copbio.2023.102936
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Characterizing the biodiversity and variability of the biological carbon pump in the Northern Gulf of Mexico
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21-NGI4-06
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Workshop/Meeting Presentation
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2023
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Sustained observations of global ocean biology – session introduction
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Thompson, L. R.
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OCB2023 Summer Workshop
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https://web.whoi.edu/ocb-workshop/
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Characterizing the biodiversity and variability of the biological carbon pump in the Northern Gulf of Mexico
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22-NGI4-35
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Journal Article
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2023
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Message in a bottle: archived DNA reveals marine heatwave-associated shifts in fish assemblages
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Gold, Z., R.P. Kelly, A.O. Shelton, A. Thompson, K.D. Goodwin, R. Gallego, K. Parsons, L.R. Thompson, D. Kacev & P.H. Barber
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Environmental DNA
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https://doi.org/10.1002/edn3.400
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HPC-powered Bioinformatics to Unlock the Potential of NOAA 'Omics Data
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22-NGI4-33
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Workshop/Meeting Presentation
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2022
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Global marine biodiversity monitoring through partnership and innovation
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Thompson, L. R.
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NOAA ’Omics Seminar Series
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https://www.youtube.com/watch?v=gXuN_Q15NUY
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Assessing Ecosystem Responses of Gulf of Mexico Communities to OA using Environmental DNA (eDNA-GOMECC-4)
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21-NGI3-132
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