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Journal Article
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2022
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Bio-GO-SHIP: the time is right to establish global repeat sections of ocean biology
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Clayton, S., H. Alexander, J. Graff, N. Poulton, L.R. Thompson, H. Benway, E. Boss & A. Martiny
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Frontiers in Marine Science
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https://doi.org/10.3389/fmars.2021.767443
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Bringing Environmental DNA Monitoring to the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP)
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21-NGI4-02
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Conference Presentation
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2022
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Using an Interdisciplinary Multi-platform Approach to Examine the Biological Carbon Pump in the Gulf of Mexico
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Emily Osborne, Luke Thompson, Sean Anderson, Caitlin Reynolds, Julie Richey, Enrique Montes
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Ocean Carbon and Biogeochemistry Workshop
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Characterizing the Biodiversity and Variability of the Biological Carbon Pump in the Northern Gulf of Mexico
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21-NGI4-06
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Journal Article
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2021
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Optimizing in-cartridge bead beating extraction of microbial and fish environmental DNA.
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Anderson, S.R. & L.R. Thompson
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Environmental DNA
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https://doi.org/10.1002/edn3.251
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Building NOAA Omics and Bioinformatics Capacity for Reproducible and Efficient Analysis of Environmental Samples
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19-NGI3-78
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Journal Article
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2021
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Optimizing in-cartridge bead beating extraction of microbial and fish environmental DNA.
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Anderson, S.R. & L.R. Thompson
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Environmental DNA
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https://doi.org/10.1002/edn3.251
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Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases
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20-NGI3-112
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Journal Article
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2022
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Tourmaline: a containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake.
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Luke R Thompson, Sean R Anderson, Paul A Den Uyl, Nastassia V Patin, Shen Jean Lim, Grant Sanderson, Kelly D Goodwin
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GigaScience
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https://doi.org/10.1093/gigascience/giac066
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Building NOAA Omics and Bioinformatics Capacity for Reproducible and Efficient Analysis of Environmental Samples
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19-NGI3-78
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Journal Article
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2021
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Subsurface Automated Samplers for eDNA (SASe) for biological monitoring and research.
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Formel, N., I.C. Enochs, C. Sinigalliano, S.R. Anderson & L.R. Thompson.
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HardwareX
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https://doi.org/10.1016/j.ohx.2021.e00239
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Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases
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20-NGI3-112
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Journal Article
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2021
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Optimizing an enclosed bead beating extraction method for microbial and fish environmental DNA
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Anderson, S.R. & L.R. Thompson
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Environmental DNA
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https://doi.org/10.1002/edn3.251
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Advancing Bioinformatics Infrastructure with Standards, Workflows, and Databases
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20-NGI3-112
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Other Type Presentation
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2022
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Water Quality Modeling of Biscayne Ba
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Alarcon, V. J., Mickle, P. F., Kelble C. R., Linhoss, A., Fine, A.
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SFWMD Water and Climate Resilience Metrics Workgroup
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AOML-NGI South Florida Water Quality Data Analysis
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19-NGI3-69 & 21-NGI4-16
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Conference Presentation
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2022
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Estimation of Groundwater and Salinity for the Central Biscayne Bay Coast, Florida, USA
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Alarcon, V.J., Linhoss, A.C., Mickle, P.F., Kelble, C.R., Fine, A.
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The 22nd International Conference on Computational Science and Its Applications (ICCSA 2022)
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https://link.springer.com/chapter/10.1007/978-3-031-10545-6_40
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AOML-NGI South Florida Water Quality Data Analysis
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19-NGI3-69 & 21-NGI4-16
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Journal Article
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2023
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Simulation of Total Phosphorus in Biscayne Bay, USA
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Alarcon, V. J., Mickle, P. F., Kelble C. R., Linhoss, A., Fine, A.
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Lecture Notes in Computer Science
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AOML-NGI South Florida Water Quality Data Analysis
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19-NGI3-69 / 21-NGI4-16
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